# R

### How To Do Pvalue Significance Labeling In R Language?

Boxplots are one of the more common graphs in statistics. This article will describe how to simply …

TwoPunch created at Jan. 19, 2022, 5:31 p.m.

### [Biomart] Query Error: Caught Biomart::Exception::Usage: Attributes From Multiple Attribute Pages...

## error ``` Query ERROR: caught BioMart::Exception::Usage: Attributes from multiple attribute…

TwoPunch created at Jan. 1, 2022, 1:55 p.m.

### R Language Ggplot2 Adds Horizontal And Vertical Error Bars To The Pca Scatter Plot Result

## Load the required packages ``` library(ggplot2) library(ggforce) library(tidyverse) ``` …

TwoPunch created at Nov. 15, 2021, 3:14 p.m.

### R Language For Principal Component Analysis (Pca)

TwoPunch created at Nov. 15, 2021, 3:08 p.m.

### Ggplot2 Plot Scatter Plots And Adds Fitting Curves And Text Labels

Today’s tweet, let’s repeat Figure 5 in the paper ![](https://static-workflow.s3.amazonaws.com/m…

TwoPunch created at Nov. 13, 2021, 6:37 a.m.

### Use Ggplot2 To Draw Points And Lines To Display The Fst Value Between Groups And The Pi Value Within Groups

Today’s post tries to imitate Figure2d in the paper ![example](https://static-workflow.s3.amazon…

TwoPunch created at Nov. 13, 2021, 6:29 a.m.

### Use R Language Ggplot2 To Draw Points And Lines To Show The Results Of Mantel's Test~

## preview ![Mantel data visualization](https://static-workflow.s3.amazonaws.com/media/content_m…

TwoPunch created at Nov. 13, 2021, 6:21 a.m.

### Error: Discrete Value Supplied To Continuous Scale

## Simulation data ``` df <- structure(list(`10` = c(0, 0, 0, 0, 0, 0), `33.95` = c(0, 0, 0, …

TwoPunch created at Nov. 9, 2021, 7:26 p.m.

### Error In Rstudiogd() : Shadow Graphics Device Error: R Error 4 (R Code Execution Error)

## solution 1 Ctrl + Shift + F10  to restart your R session ## solution 2 Without resta…

TwoPunch created at Nov. 9, 2021, 12:50 p.m.

### R Data Analysis: How To Use Hierarchical Cluster Analysis To Do "Symptom Clusters", Practice Examples

## introduction I want to do symptom group consultation for many students’ master's thesis. I us…

TwoPunch created at Oct. 21, 2021, 8:32 a.m.

![error](https://static-workflow.s3.amazonaws.com/media/content_media/TwoPunch/4e88943e-a320-4e50-a…

TwoPunch created at Oct. 5, 2021, 4:03 p.m.

### Error While Rich Displaying An Object: Error: Continuous Value Supplied To Discrete Scale

## problem ``` Pre0 <-rms::Predict(fit,Hb,fun=exp,type="predictions",ref.zero=TRUE,conf.int = 0…

doporos created at Oct. 1, 2021, 12:03 p.m.

### Error: Problem With `Summarise()` Input `..1`.

## error Using the command `df = OG %>% group_by(Gene,Domain) %>% summarise(count())`, the follo…

doporos created at Aug. 23, 2021, 1:26 p.m.

### Error In Grid.Call(C_Textbounds, As.Graphicsannot(X\$Label), X\$X, X\$Y, : Invalid String In Pan

## description This error occurred when using `forestplot` to draw a forest map ``` Error in…

doporos created at Aug. 23, 2021, 6:53 a.m.

### R Data Visualization-Bubble Matrix

## Step1. Preparation of drawing data First, adjust the data you want to plot into a format that…

doporos created at Aug. 6, 2021, 6:30 a.m.

### How To Output Editable Pictures For Powerpoint In R Language

With the support of the ggplot2 package, the R language can make very beautiful statistical graphs.…

doporos created at Aug. 2, 2021, 9:55 a.m.

### Motif Visualization-From Pfm Matrix To Sequence Logo

How is the Sequence Logo drawn? ## Calculate PFM According to each sequence containing the Mo…

robot18 created at July 28, 2021, 2:53 p.m.

### How To Use R Language To Mark The Significance Of Pvalue?

Box plot is one of the more common graphs in statistics. This article will describe how to simply c…

robot18 created at July 27, 2021, 8:52 a.m.

### Single Cell Transcriptional Regulatory Network Analysis Tool (Tf, Motifs)-Scenic

## Introduction I believe that many topics should have already talked about the use of SCENIC. H…

robot18 created at July 14, 2021, 2:17 p.m.

### Tcga Data Analysis Combat-Cnv And Mutation

robot18 created at July 14, 2021, 6:20 a.m.

### How To Plot Chord Diagram To Show Gene Density With R Language Circlize Package

## greate example on Cell I was reading a paper recently ![paper](/media/image_P3Dg83S.png) …

robot18 created at July 13, 2021, 4:42 p.m.

### 3 Main R Packages Of Difference Analysis : Deseq2, Edger And Limma

Data needed for difference analysis: **Expression Matrix** and **Grouping Information** **TCGA**…

robot18 created at July 11, 2021, 3:50 p.m.

### The Igraph Package Visualizes Gene Regulatory Networks

## introduction The overall idea can be divided into two major steps: 1. According to the se…

robot18 created at July 11, 2021, 5:52 a.m.

### How To Plot Circular Heatmap In R

## What is a circular heatmap Circular heatmap, as the name suggests, is a form of heat map. Acc…

robot18 created at July 10, 2021, 7:07 a.m.

### Ggplot2 Histogram Data Visualization, How To Use The Stat_*() Function

## Preface We often use `geom_*()` functions when drawing layers, but rarely use `stat_*()` func…

robot18 created at July 3, 2021, 11:42 a.m.

### R Data Visualization-Circlize Genome Drawing Function

## Drawing function The function to create plot regions of genomic data is `circos.genomicTrack(…

robot18 created at July 3, 2021, 5:04 a.m.

### Venn Diagram Upsetr, Clearer Than Traditional Venn Diagram

I just used the Venn diagram recently, but because there are more terms, the visualization effect o…

robot18 created at July 1, 2021, 2:30 p.m.

### How To Plot Upset Diagram In R

Today, I will introduce to you the use of the R package UpSetR and the method of drawing UpSet diag…

robot18 created at July 1, 2021, 2:20 p.m.

### How To Plot Pie Chart In R

## Data structure The data structure is like bellow: ![Data structure](/media/image_6pLZYuL.p…

robot18 created at July 1, 2021, 1:54 p.m.

### How To Plot Enrichment Analysis Scatter Diagram With Ggplot2

## 1\. Scatter plot of enrichment analysis The enrichment analysis scatter plot is a graphical d…

robot18 created at June 30, 2021, 10:15 a.m.

### How To Use Ggpubr Plot Various Kinds Of Box Plots

Today we continue to learn ggpubr package to draw various SCI publication-level box plots. ``` …

robot18 created at June 30, 2021, 7:18 a.m.

### Use Ggpubr To Make Data Visualization More Elegant

ggpubr was created by [Alboukadel Kassambara](http://www.sthda.com/english/rpkgs/ggpubr/index.html)…

robot18 created at June 27, 2021, 2:46 p.m.